SubtiBank SubtiBank
yhdH [2019-06-26 09:42:35]
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yhdH [2019-06-26 09:42:35]

similar to sodium-dependent transporter
locus
BSU09470
pI
9.75
mw
48.78 kDa
protein length
451 aa Sequence Blast
gene length
1356 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    1,024,865 → 1,026,220

    The protein

    Protein family

  • sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family ([protein|search|with] yocr, according to UniProt)

    • Paralogous protein(s)

  • [protein|D5A30C841A142B49C50A38936802D0F60485DD7C|YocR]

    • Structure

  • [PDB|4US4] (the protein from ''B. halodurans'', 44% identity, 75% similarity) [Pubmed|25282149]

    • [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|FF16BA2B744E89AADB00F936B9A50A82726312A7|yhdH]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A693 (yhdH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/693 NBRP B. subtilis, Japan]
  • BKE09470 (Δ[gene|FF16BA2B744E89AADB00F936B9A50A82726312A7|yhdH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE09470 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATAAACGTCACTTCCTTT, downstream forward: _UP4_TAAAAAACAGGCTCCGTTTC
  • BKK09470 (Δ[gene|FF16BA2B744E89AADB00F936B9A50A82726312A7|yhdH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK09470 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATAAACGTCACTTCCTTT, downstream forward: _UP4_TAAAAAACAGGCTCCGTTTC

    • References

  • 25282149,22383849